Scaffold Ga0208644

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1003491 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208644_1003491 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12203
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (55.17%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12203

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (55.17%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011666	Metagenome	288	Y
F032652	Metagenome	179	N
F033013	Metagenome / Metatranscriptome	178	Y
F056612	Metagenome / Metatranscriptome	137	N
F087198	Metagenome	110	N
F088884	Metagenome	109	N
F091645	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100349110	F088884	GAG	MQLFDPAMAGTYVWQVADPKSQKTSYSACKSQTPPPNAVHGHPLGKYDSDGLYWTFVPMAGEEDPNSSRSGRFSKHPLAEEEQRKAVKEKVWGRLDSFGSYKETEF
Ga0208644_100349112	F033013	N/A	MAIQLTAKASTLKTVMLQIEPDLYARIKAAAKQHNLPAAAAMRQILEQGIQEVEANA
Ga0208644_100349115	F056612	GAG	MSNFESAFDAKFSLFKVKQKKSDKAPDKTGTIELELSEAMKLAEYLTAHPGEEGYGGKTVIKLAISAWDRCSTTGTEYTSGTVWAKKPEAGVNDVPVF
Ga0208644_100349116	F091645	N/A	MDFTALFPEHVEPNRGPGISYCVAPNARMFDYELVMPGERRLRGCLRAINKKDAERILQNRHPGATRIDIGEGRKIISAPPKA
Ga0208644_100349120	F011666	N/A	MEWHPIERTQESQFSEIATAKMLEEWLKQGDIKGIYNAALLLNTMLHQQRTITKWLAGEAARNLGRPDLEDDILQNSIIQTG
Ga0208644_10034914	F087198	N/A	MDSYQRNAETLLNELAQLKYEQRAIELRIKDVQAKLTVHVAAGDMEHLAGESENTYKYDNINYVFSNGRVTYDFSDCEDVTAAAENLKELQSTAVALGRAVQKVGTPFWTVRA
Ga0208644_10034919	F032652	AGGAG	LTIVHLSRSLVDQCKLCAQQRDYNRRSSIDYSSDKTDDKGIWSFMGVLGEVALLTYFELEINWEYLSTDLGFCGVDVGDIWEVRAMSKFGNRLFLWSDEVTKSSKLAYAWSKVVVDPSSGQCTVCGWAMGYEIAMRGVHAQYDCKRSSYFLDNTLLRPHRDPKQDQTEATRLHLLYRGIEDQPLF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208644_1003491

Overview

Ecosystem & Geography

Associated Families

Sequences