NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1004192

Scaffold Ga0208644_1004192


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1004192 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10931
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008878Metagenome / Metatranscriptome326Y
F010762Metagenome299Y
F022116Metagenome / Metatranscriptome216Y
F025689Metagenome200Y
F036198Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0208644_100419217F036198GGAGMINPKTEQRRDDYLQWLYQQSGRTCSTYTGLYQQRIAELIKRDMAEALGDE
Ga0208644_100419218F010762AGGAMNQTTLDIAFKEWWETSYGRPPGTHAVMTHVAFAAHILELLELMQDDQSEN
Ga0208644_100419220F022116N/AIRLLMTEPFLTTDELAARWGMKPAAIKNQRARGIGPAYVTAPRIGLPAGTPRVRYPLAQVLAFEEANGITPLN
Ga0208644_10041925F008878N/AMNRLADYIALAVAVHGVALIVVNLTPTPKDNKALRKTAKLAVKLYRAIEVVAGVVTPLVK
Ga0208644_10041929F025689GGAVHTMEAQFHGAANAAQLRALHAAADWGGLLEYALLIAEQEASQRSQIHWLAQEASAALRTGLEQWHLDAAEELLRGRRREI
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Institute for Fundamental Biomedical Research
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