NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1011345

Scaffold Ga0208644_1011345


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1011345 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6051
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010828Metagenome298N
F058891Metagenome / Metatranscriptome134N
F101003Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208644_101134510F010828N/AVKDQAAIDLLSDKELYELAQKLCECPDDLIQEITLQILEMPDEKWKQINEGGYLRFYVVRAMITMATSPRSSFNKLYNRHNHQEVDHDREDYDWEKEADISLIETLMEELHWYEREVLKLWLEEGSYRKVAKKVDIPYKSIGNTVNKAIETLRDNYYGIHLERIIRERIKLPLD
Ga0208644_101134511F101003GAGMEYILSGLSASVLSYLWIEVLAVDQLLGVEAKPFSCRLCMSFWFGVILSGFHGVEALLYVPMLAILFERLMWRFEI
Ga0208644_101134512F058891GGAGMMDKNELLLFIAERLEQITKMSKGQFSGRITRDEQNLYQEAWSYIDPKAKVCFTCGKTPQLMSLALLNYYETNKPKTRGKRSNK
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