NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1012456

Scaffold Ga0208644_1012456


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1012456 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5696
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012887Metagenome / Metatranscriptome276N
F046341Metagenome151N
F048968Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0208644_10124561F012887N/AAGIFILVLTIGKILNRLDVLESKMIEAWKAINELIRK
Ga0208644_101245613F048968GAGGMNRLTKICIAVAVVAAFLWVSTEDYKHEIEQHDQYIKDVCAGYHPDFLNVQPDCSKVN
Ga0208644_101245614F046341AGGAGMFETETYRIPHFAIVPLVYGDYSGIQDDDEALVDNLQAWLDEEHGEGQWHIGDISEPYHGRADFERILGEICNVEIEVRI
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