NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1019141

Scaffold Ga0208644_1019141


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1019141 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4361
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002317Metagenome / Metatranscriptome571Y
F002867Metagenome / Metatranscriptome524Y
F003805Metagenome / Metatranscriptome467Y
F043896Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0208644_101914110F043896N/AMSKHEIADWAHKNWGQVIVDQARVDLLEKLYEWDGRANPEHPLHHTYTGLYQQYNQR
Ga0208644_10191414F002317N/AMDNHEEVHAGAPEHPNPFNQAVPALLTAAVVGLGGLFMQVAKLDQSVSTVAADIQELKNDSKERLADLESRVRIIEMTVGRQNK
Ga0208644_10191415F002867AGGMSVVHTTDFGNGYSLDQLENERGELYYRACLNSVCRYAEDHYVAMMYLEGMGWDPKASPQ
Ga0208644_10191419F003805GAGGMRPIEHSTESQFHKAAQDKWLVDLFNKQDYRGLLEAALVLNTLHQLERTKSAWAIREAAENLADQFGLDRDSA
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