Scaffold Ga0208644_1202178

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208644_1202178

Scaffold Ga0208644_1202178

Overview

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1202178 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	862
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F037237	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_12021781	F037237	AGGAG	MSSNIGDLVDRTFREYLEPMDDIVSYTTLSTGIDASATEVVFDGDLLSVEEEDALDAGTIIEVGQELMLCKDLNSVTNTITVVRGARGTTAAAHTAEDLIKIAPPFPRKNVFDAVCDQIKNLYPTLFAVETQTVVVGNGYTLLGTYDAPGTHNYLVTPIKAISQYTDFSS
Ga0208644_12021782	F003196	N/A	MIDIQDVLIDISEDASNSLGFKTNGLLLSGIEFPAAMTGSNITFDYSIDNTNWVDVVETDGTEVTYVVSVGNIQRLDPSGWAFAGEGWLRITSDGTEAADRTLKVYTRHS

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