NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209631_10003409

Scaffold Ga0209631_10003409


Overview

Basic Information
Taxon OID3300025890 Open in IMG/M
Scaffold IDGa0209631_10003409 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18299
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (23.81%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017048Metagenome / Metatranscriptome243Y
F031650Metagenome / Metatranscriptome182Y
F049219Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209631_1000340912F031650AGTAGMDADMPQMTAEEFDQLKKEYTDAIPEGDAIKAQLKSFNKEQKQRHAKIYAYMREHNMMSADLGGVTFEREEKTTVPAVSLQVLEEIVENPAIVEQYKRDHAKTKESLRVRKPKRQRTNDTSDE
Ga0209631_1000340914F017048N/ALYLNEERLFSTKIMSNFNYEPSKSSLRADTVVEFVNRSLLDFKMNEIPGMGPASIQKFGDHGIYTPAQIVAKFLSFVDSEEIQAQQVCEAFYNWANPIMGKANTHNLTFALANYAGEHGLFRYE
Ga0209631_100034097F049219N/AMIQVESDKFLARRLDTLEQGVNVLDNRVAALDDKVAHVIQMNSEIMIQSNENFREMRRTLDDHRTELKKSIRQIKGSFSTKCQLMMFALGLTLWTIFMAWVMWA
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