NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209630_10003113

Scaffold Ga0209630_10003113


Overview

Basic Information
Taxon OID3300025892 Open in IMG/M
Scaffold IDGa0209630_10003113 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15321
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087221Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209630_1000311328F087221AGGAGMSTNIKNLIDRTYREYLEPMEDMVSYTVLSGTLSTSDTSVGFNGDLLSIEEEDALDAGTIIEIGQELMICTELNAVTNSITVTRAARGTTATTHDAGDVIKITPQFPRVNVFNAVKDQIENLYPTLYAVETQTISSAVGYVALVGADDNRIVAPLKAVSQYQELDAGNQTTVQFRGVAMELIDVPTTVTASGKVVQFSGVSTGVNVHCTFKKKFGEVKDYDSDGDAEDTTLAEIGLETEYEPIIMAGVAAQMIAGKDIPTYTSDYITEQMAVTNYPVNSSSNIRNSLLQYQQVLINQARKDLRARYPEPVSLNSVVYPSA
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