NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10129030

Scaffold Ga0208916_10129030


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10129030 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1080
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033008Metagenome / Metatranscriptome178Y
F074785Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0208916_101290301F033008N/ALMAIFRTPRDNFVTPRLAEFNIKGDRLSQEQRLANRLAVHYAATPRGRNVFQLTNLSYTENQPSDMSTVIKTYLGGHDIEVDATEVASLTAAGYGSYIT
Ga0208916_101290303F074785GAGMAGRNRDTSRLLNLVGVNIENIGYGKMVAGLRGALSEKVTLADDAEHTVFALRPNMIKGWKHDQVPHLLTMWETNWLPPAFSEYLQPFSKVIVPSLHNWELFSQFHDDVHMIPLGVDRTVWCPSEDKPDGKFRLMCGGSEWYRKGLDVVLEVFNKLQLPDTELHIKIVPPHLSAPKNL
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