Scaffold Ga0207692_10051495

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207692_10051495

Scaffold Ga0207692_10051495

Overview

Basic Information
Taxon OID	3300025898 Open in IMG/M
Scaffold ID	Ga0207692_10051495 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2088
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.4774	Long. (^o)	-85.451	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F098144	Metagenome / Metatranscriptome	104	N
F101718	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207692_100514951	F101718	N/A	MLRIAVPVVAVMLALLTGMGTNAPARQFPIYPRPGGPPSAAAAMVRGISLSVPRRASSTADKSVRLQVELTP
Ga0207692_100514952	F098144	GGAGG	MDEIVPDAEAWAIAHDFTPTESEPNGATPLLREGMMGIAATSYAGYVLGRDATLYEFSVGSPTVSDAFGGGGVDGSWFTLFLVPIDDPGFRRLTVHPKKQSDRDWWNRLLGRDDVRETGDVDFDEHHQVIASSDLDNDRFAELVGTDLISLMNANTDLLVEVERGDEGDAALLVALPGIGIGDDGLNRLLAATEHVVGLF

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