NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207692_10296225

Scaffold Ga0207692_10296225


Overview

Basic Information
Taxon OID3300025898 Open in IMG/M
Scaffold IDGa0207692_10296225 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)983
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037887Metagenome / Metatranscriptome167N
F073913Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0207692_102962251F073913GGAGGVTGTGGSGGSTPRGGQAEHGPWFTSLPPCETLVPCGQGRHAVRWEAGELRLASHADLEAELVLVALGGEKARCVEIAGAWRRHTADLTVLGLGPRSAADEVAVSWDDVHAAEQAARGGAGGPGRWGWRLASPPRAAMARAAVRHQQYQEEAGDASQRRLDMLSLLALGTGFQVRLIGQVIAAHADRLDEPDEHGYSIRPALKAALAGRVALVAEQWLGIDPDQVEVSLHPP
Ga0207692_102962252F037887N/AQGSSVLHVLAQGPAPEPRPGPLDIDLNFPLSFWLRESGGRWHAARPDRCHQADGESAIRLRLVPPLTRPADWVEVQAGGRSARVRATLPLRWRYPS
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