Basic Information | |
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Taxon OID | 3300025899 Open in IMG/M |
Scaffold ID | Ga0207642_10000005 Open in IMG/M |
Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 401934 |
Total Scaffold Genes | 417 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 282 (67.63%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan, Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003627 | Metagenome / Metatranscriptome | 476 | Y |
F005789 | Metagenome / Metatranscriptome | 390 | Y |
F064701 | Metagenome / Metatranscriptome | 128 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207642_10000005198 | F003627 | N/A | VDRETARAKMSAGLLAGGIVAAIFALCFVVAMLYVAS |
Ga0207642_10000005249 | F064701 | AGG | MRLEEGRPGGVAPALVPIALGDPLRVGGGGIPSGRGRTLYYSMRHRTQLYLDEGQYRWLKQRAGEAGSIAAVVRELIDAERVRRLDPTEDPLLSYLVSESPGKGRERTSVTSLDRDLYGQ |
Ga0207642_1000000587 | F005789 | GGA | MATAVGLDASPLNVLRSMRGRIVDARVAYPEVLHVEVKDSAGELWRLATQDAEWSPSDPAELVGRSVDDADIDGETGELRCKLSDGSLLDVKPAAREAEDDPPNWELITPSGVVLEFGPGVRWQIGSADSRASARA |
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