Scaffold Ga0207710_10000238

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207710_10000238

Scaffold Ga0207710_10000238

Overview

Basic Information
Taxon OID	3300025900 Open in IMG/M
Scaffold ID	Ga0207710_10000238 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	47168
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (74.36%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050738	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207710_1000023834	F050738	GGGGG	MTKVVFAACLLMACALAGPPALAKDPTQLLLHKGARVGVVNMMDPEVTHFHASKVLAQSFFKTQPVNWQVDSMLSDAATQRLTQLELVPVAMGASDALMRNRDDFFVNNSVAKKLPREAAKEFAQLAASERLDALIVLAPALNNSSQAGGAVRRNLPDYLRGWGFVTGDTDEKPALFNMTQVLLIGIEPDGAALSAREWGGGYTDEWSEYVPPDNPKQLPLDLLDRLQPHFGRILARQTGRVMDWITVAP

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