NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207710_10297919

Scaffold Ga0207710_10297919


Overview

Basic Information
Taxon OID3300025900 Open in IMG/M
Scaffold IDGa0207710_10297919 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)814
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016064Metagenome / Metatranscriptome250Y
F016418Metagenome / Metatranscriptome247Y
F096853Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0207710_102979192F016064AGGMLSWCMANSDNLHETAEHRGYSLQLSCAPPQWQVLIGMVLKDRPALPPGKQIVKGWNEEETLKRAKTRIDLLIESLN
Ga0207710_102979193F016418AGCAGGMSYRGYDLEQKTLMVGWQITITKDGKFVCNGSVAKSLAAAMDEAEKFVDCVLAECDGAAPRGRS
Ga0207710_102979194F096853GGAGGMFSIGQTFEGMIGGVPRSAKVIAIVDGGRIGWLEFLDVKGPLFELDMAKKSVWKLVQG
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