NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207710_10330521

Scaffold Ga0207710_10330521


Overview

Basic Information
Taxon OID3300025900 Open in IMG/M
Scaffold IDGa0207710_10330521 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)774
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016064Metagenome / Metatranscriptome250Y
F016418Metagenome / Metatranscriptome247Y
F096853Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0207710_103305211F016064N/AMGPLETMREPIEYRGYSLQASYTSPQWQVLIGLVLKDRPALPPGRQIIKGWNEEETLKRAKTRVDLLIESPNLH
Ga0207710_103305212F016418GAGGMSYRGYDLEQKTLMVGWQITITKDGKFVRNGNVTNSLTSAVDEAEKFVDQVIAAVDIAAPAVGV
Ga0207710_103305213F096853GGGGGMFSIGQIFEGLVGGRIRSAKVIAIVDSGRIGWLEFLDIKSPPFELDMAKNPVWKLVQRER
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