NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207645_10047675

Scaffold Ga0207645_10047675


Overview

Basic Information
Taxon OID3300025907 Open in IMG/M
Scaffold IDGa0207645_10047675 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2736
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006663Metagenome / Metatranscriptome367Y
F064220Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0207645_100476751F064220GGAGGMLRSRILLMLLAMLPGAWLGAQVGPDPRENSFQFFVDGAVVQGVIGYRIEFNHDPQTRTDSRQLNTAYSPDQRRLAVTVTQKGLNRLQGWLNDATANDNPVSKSVAIVARDNQNVVLARWELTNVQPATISSAGAGTLTEVTATIEFSYSTLTLTQAKPD
Ga0207645_100476754F006663N/AQDKPVTGWPGNLRNGLPAQLPGWEAAPRDPLPDTDENEMGVFTQVTRFYQRLESPTVTRQFQFVVQDYARDKNLEASIRKAVAEAAKSPSVETREVTVKGLKAFAVTDRSSGNPTTLVTVVVLPSRLVLAQGANVDRDSALKLLGYVDFDAVAAAK
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