NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207643_10007611

Scaffold Ga0207643_10007611


Overview

Basic Information
Taxon OID3300025908 Open in IMG/M
Scaffold IDGa0207643_10007611 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5818
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023376Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0207643_100076115F023376AGCAGVSDQKPESGERRAGAWQCPTCGRHVPRHVDACRCGSERRRLEALGYKFDSEPSVQAAPAARVQHVRAEDYGFAGTLFGYQLDTDLGAPLRVALKVIFGTAVIALVVALVRYTHTEPLPARDNIHILSTLDVFTRNAGPEAGNTIPTFITSTGRLGVLTSAGTPEDLVKSLQESDLRQGFCSQSVVNQVRHEYPGFYDDWPNDKLERMVLEKYPEFADRVCVLSVRFDAPASDVIKYELKPRALAGHALLWLRTLLIAGAFAVVCLNVYYRLIVGRLLAPVVSEA
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