Scaffold Ga0207684

Basic Information
Taxon OID	3300025910 Open in IMG/M
Scaffold ID	Ga0207684_10000094 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0207684_10000094 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	165810
Total Scaffold Genes	170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	107 (62.94%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

165810

Total Scaffold Genes

170 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

107 (62.94%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022380	Metagenome	214	N
F032564	Metagenome	179	Y
F038172	Metagenome / Metatranscriptome	166	Y
F059842	Metagenome	133	Y
F069789	Metagenome	123	N
F075911	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207684_10000094100	F069789	GAG	LTWRRTALVAGWIATAGWGIYYLIALAGSSPAFVANAVLHFIGGYVWARAIMTPQLSVPLALAGTFFAGVYTRLAVSFATPEIVFAPLGPIVAIALADASSQRNILFSVIAFGLGLVAFLWLAP
Ga0207684_10000094151	F022380	AGG	VSLLAGLIAGLIVAAIYVIAGHLRIETPQLVLSGNSTLALATASVLVPLAILWGWTWVSDRWSGRSGPRLLLFNLGLVLATAAAFPLDAVVTASAPDRIVFDPRISVNAVDGILWVLPVVAIAGMLYWLFGSGKLPVGLPMLAFAYLVGLPLGLFFPPAAMGAVAGTAAGHAWREPGARTLIVVLVIVLMLVAAVELPLAAATVNGPLFK
Ga0207684_10000094153	F059842	N/A	VVAVAIVAGYLAGLIVAVLTIGAENSRIAFGGYALSGNGALIVPAILSPYALYPGWAWSLAHEGDRRLEAALYTGGLYFGVGSISLLEAAFFPQSADVTLLSAVPGFLVTGALFVIPGALFGAATLWLIRSGHVAVTPLTAAFGIVIAALTALLFGAGLGILTGGAVALALQRPARRTTIGAVLLILLIVVGNAPFIPALLTPSGPTR
Ga0207684_1000009450	F075911	GGA	VRLALVALAALVVVACAPASVPPLRVTRYSTIPENHYPAFDRSVDDAAAARRVYDAVRALPPAPNRWCPAGFGLRYRLTFNEAARVTLLVVVEGDACAEAIFSESDRRATDDVFWDLLADTLGVKKSEIRYLLPNELRR
Ga0207684_1000009458	F038172	GGAGG	MRRLLLAFVISLLTLGAFAAPAAAKCPTCLDGVSVQTPDGQRWTDGKPVTLVVTARRGDPGAAFPTTGLAVIMQTDRERTKCLDVPLKLVSQSGDGAVYAGVFYPFKAAIYSGLVQFGDFKFDVTIDVNKVAATTPVATNDLPVAAPEQATGETLNYTIGTIPFLVLAIGFWSALALLLARRQPRMRTV
Ga0207684_1000009496	F032564	N/A	VAEETSIIFAKDDVIIVEEPLASVAAKLAAGGFVRFERGGEIVMVNAAAVRYLRTVRQAQGGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207684_10000094

Overview

Ecosystem & Geography

Associated Families

Sequences