NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10009039

Scaffold Ga0207684_10009039


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10009039 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8828
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001527Metagenome / Metatranscriptome678Y
F089307Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_1000903910F001527GGAGMMISSENVLSRQLKPLCSRDNHVMKYELGGSRANTGHLASYHCGSVGCSVRYNSTAGYYMLFGMPGHAYAVDEPGVNTMKCPIHGRWLYRRNNINAEPRVRWFCGVEDCRYGYIAKTKAEWVRA
Ga0207684_100090398F089307GGAGVGGRWKGTTMQHKKTQVALNHDRHSPVLEVAGARFCERRSRENLGPDLRSIVFAAHKLPAQVNPPARVWRSLRLQLEREGLISRSVKGRLEEHTRFPMFRN
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