Basic Information | |
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Taxon OID | 3300025910 Open in IMG/M |
Scaffold ID | Ga0207684_10015444 Open in IMG/M |
Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6570 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan: Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007952 | Metagenome / Metatranscriptome | 342 | N |
F009258 | Metagenome / Metatranscriptome | 320 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207684_100154444 | F007952 | GAG | VKRAQDPFILTATVNEALVRLDALMNRLVEADQTGSGIDPLRIANELGQIRQLLAEAPAVVRAKGGQKHFRCEACGTISHGERQPEKCPTCGGRKFFAADIEQPFVESGAG |
Ga0207684_100154447 | F009258 | N/A | VPVVLFVFALLGGAIAAIFAPLYLDRFRRELSRADEIEKIARGIGLRFSRTDPAYPGSSAFGYPFELFSRGIEQTCENFITGTVRGINVVAFDFLYRLRLDAEDAEGHARSEPIRFSCALATVAGVRPHVVIEPASTQLSDRADGEPVRLEWGDFNARYRVISPERGFAAALIDLDLMTWLVDEAPDLTLTWEIQRDEVLCRAPGLAPNDFAELLKALPEFARRIGPGASD |
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