NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10043086

Scaffold Ga0207684_10043086


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10043086 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3826
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006203Metagenome / Metatranscriptome379Y
F011787Metagenome / Metatranscriptome287Y
F015367Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_100430862F011787AGGAMKALPLVGVLLLVLGVLSFIIPVPHRENHRLKIGDAKISVETESSDKLPPAVGVVLLAGGVVALVLGLRKT
Ga0207684_100430864F006203AGGAGGMLESAVDLLGGLFLSGLTLLIVSCIVGSIFAALRAVSRRSATVTAKR
Ga0207684_100430865F015367AGGAGGMETKSKYSLYVAALSTLALLFPLGASARDNKHSVDIPAEVQIGSTQLKPGNYTVEWQGTGPAVQVSFRRDGKTMVTVPGTLKTNDDQVTQDAIVTEATSADTSTLKEIDFAHQKEALVFDQNPGGM
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