NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10592201

Scaffold Ga0207684_10592201


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10592201 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)947
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032398Metagenome / Metatranscriptome180Y
F062039Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_105922011F032398GAGMTKLPDHGDALRMAAFLERHPGWSAFWDKQEGVWRVAEDDPSSDLHAEDADVDRVIDYMVTHSRR
Ga0207684_105922012F062039GGCGGMITMHKQLLRGAPDDVRATVEHLARGQGHLGYLAGSWLRELAIELTASDGLTVSAVRYDDMAGYELEVTLASVPHLDPIVIGRSRTGDQCQITLERWLPINGGPGIKDAVDLIHAILAASANHDPARIIDTPP

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