Scaffold Ga0207707_10219558

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0207707_10219558

Scaffold Ga0207707_10219558

Overview

Basic Information
Taxon OID	3300025912 Open in IMG/M
Scaffold ID	Ga0207707_10219558 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1655
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023285	Metagenome	210	Y
F026234	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207707_102195581	F023285	GGCGG	VSEELSARLRRVEQQVRVFKELHQSELQIILDELTDIAKQIEAERAAAAPTANASDVDPADPAASSPKRAKWLAEQANKTAPKSRRELLFGERDTET
Ga0207707_102195582	F026234	AGG	LYPGDGSVTSSGQERLLVRTIVCAYTQAELPTPWLAIFHRFERVMEKARLRIRVRLFPLEELPEGFEVLVVPPELQEAAEALQTGARIIVTTRAEAPAAADALLREIELGETLYAEKVRPGEPKIMTHRGGDIL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.