NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207707_10496478

Scaffold Ga0207707_10496478


Overview

Basic Information
Taxon OID3300025912 Open in IMG/M
Scaffold IDGa0207707_10496478 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1041
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001123Metagenome / Metatranscriptome770Y
F011969Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0207707_104964782F001123AGGAGGLAKQNDIIKEENAGQNGSTGEVNEVKKAFVEPAISVPVDVLEATTFFQAATSGVTN
Ga0207707_104964783F011969N/ATLEPALQLMSPTVYVDYELDTGSQNPPKPLGIFFYDQNQGEPPSSAVVSGANQTLLVEGNTEDGVDSDTEADKKKEDEQPLRVHYENYLLTVKAKKQRLPVVLVKIGEEIGIPVDIQNENLDPIDVDISKLPVEDVVRQLSPHLKYYYRADLTRADKRALRLVLAEPAKTTQGP
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