NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207693_10148354

Scaffold Ga0207693_10148354


Overview

Basic Information
Taxon OID3300025915 Open in IMG/M
Scaffold IDGa0207693_10148354 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1844
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013473Metagenome271Y
F030585Metagenome185Y
F071543Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0207693_101483542F013473AGGAGMTTLVNRHRSAKRHAQHHPYARLYRAVILRAVDDLAHTEHQDEAREWLLSPESDYAFATSGISPNSIRQQMI
Ga0207693_101483543F030585GGTGGMAGAQTQVTEGASLPQRGSEKYWLVVDEFADVAIHFAYAKRFAQLHERSLTGRQCQQYSRIALDYGDQLAVVKRAGVSAESEFWNDVRVHSIGMIAAPGAPIPGHRTGNYWVTTGSEAGDRELRRLVWLEIDDVSSQLTLTGGYSFSTLNTGCLSADQEPTVKAQR
Ga0207693_101483544F071543N/ARNTAALEIVWRNQKSLQRRRRWEQVNQDSAATHYLVQELVSSPLGSFWRTTSNLEFIPGGRAA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.