NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207693_10601307

Scaffold Ga0207693_10601307


Overview

Basic Information
Taxon OID3300025915 Open in IMG/M
Scaffold IDGa0207693_10601307 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043044Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0207693_106013071F043044N/AWLYEVMPDGTSHPLWPTSGRPMATVDAAGAVYVSVEGGQSTTTRKYLRVPRAEGMSADPVTVYMDKVTGFWMIQNSGRTNTLRVQQYGLSAVPLRPQTVMPMAGRDVAVWIPVVPHAAPQGNSESFRLLILSGTERQDAPGQTRLITAPRRYLSDAKQEALIAYFGDHLSWPPLPAPHVRQQAEVEQIAYQARLRKEPTPERWARNRFDVLAGRDGLFKDADWYPRLGGPGRTLANHLAAFHRLVELRTITLRRVCDWAKKHDVAPYVIIDSQLVPPN
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