Scaffold Ga0207662_10132971

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207662_10132971

Scaffold Ga0207662_10132971

Overview

Basic Information
Taxon OID	3300025918 Open in IMG/M
Scaffold ID	Ga0207662_10132971 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1570
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003667	Metagenome / Metatranscriptome	474	Y
F039301	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207662_101329711	F039301	N/A	EPNGYPGGGVLERGLRLKSRKAGDAHPFVDPATFTQWVKRAQENAAKAVQEEKQKAKK
Ga0207662_101329712	F003667	AGGAG	MGKLFGAGLGVLVLAMTLVFAHSRAFGQAARPADPIFGRWMMDQTKSVNNRRGDHATFPTQHVRILAPDGDGVRNTLANTPTSAPEYSYSARFDGKDHPDPRTPGKDQTLAHWHLAPDLIVRQQKTDGKTSEWVIYTVSSDGKVFTSISWTPSNPELQDVQVFTRAN

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