Basic Information | |
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Taxon OID | 3300025922 Open in IMG/M |
Scaffold ID | Ga0207646_10000980 Open in IMG/M |
Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36687 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (54.55%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan: Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F008542 | Metagenome / Metatranscriptome | 331 | Y |
F028975 | Metagenome / Metatranscriptome | 190 | Y |
F039404 | Metagenome / Metatranscriptome | 164 | Y |
F067582 | Metagenome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0207646_1000098014 | F008542 | N/A | VGIAIVLAPVGELALPALGATIAIDLSVFGAIWLSMRPGPPDITSPEQLARLVQGRKPVVVEMYSNFCLICMANRQTIKIAATTLSGQCRFVRVELPTAAGAVIGDVYKCQYTPSYLIFDEHGDLVRTIIPDNVTPIANGYRVLDESGAVVSRVPRVTPELLVDLVRFTG |
Ga0207646_1000098021 | F028975 | N/A | MLAAAGLLATACFGKFALGVTQTVEPNPILPGASVKQEVNVEADGLLGTAVKQAMTDAATKGQAQVQSGTQWQIRDTSQGAQVHLRMSRSVSLAEAQTAVSKTSTGGFDVGTVSVHADDWVLARHYTVRVVVSPSAPSTPAGTPTGTDATSQQLAQAILAGITYDYFVSLPGVITATNGVPGDNSRLVWHLDLTGTSERVLTAESIYPDWPRLILLLVVFIVLGGGVFLRSRRSQPVVTEPEAHTSPPQI |
Ga0207646_1000098037 | F067582 | GGGGG | MYRWIVFVHIASVLGLLLVHPVTVAFHLKQERDDNRIRELLEVTEAASRLRWVFFGLTIASGVLLGFLGSWWGTAWIWAALAIFVAIGVVMNLYGGRTIDRIADTHDDSEMERLLTRFRPGVLAVTGAGGLLVVLYLMLFKPT |
Ga0207646_1000098038 | F039404 | AGGAG | MAKSRAERERGRGETPSKRALRGAQKTARQDPQRGVTSRARKRIQGHEDVPDPTYGGRPGEVKSKWRPPGDLMTPRQRRLARKKH |
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