Scaffold Ga0207646_10079408

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207646_10079408

Scaffold Ga0207646_10079408

Overview

Basic Information
Taxon OID	3300025922 Open in IMG/M
Scaffold ID	Ga0207646_10079408 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2933
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F046497	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_100794083	F000092	GAG	VKQHLGRQAGVQNVEVSLRDGKVDVTPKEDGRIDPAQLLKATYDSGVSVAELDMTARGNIVKDASGNLALQVEPNQSFTLTSNELSKTLEPLANSATQVTVRGQLYKKPDGKGKKKADTSAPLKFLVLEIQKKE
Ga0207646_100794085	F046497	GGAGG	VRSLLGRSPRMSVSLLLVILFLVARAKAQGPAPETAPPLFPGGGLVSYNSTFTTRSLMPGFSGNIPLTARPTFAHEGDFNFTWGFHHDFDLTILVPIVTNHFEMNGMPTVRGTGLGDAIVFLKYRFYRRDSARGTTQASFTIGPKLPTGRTSLADAKDNLLPAGLQGGSGSTDLFAAANWTYTGLFNLRRLVADEDIHALFRSQGAQKTRLGSDIESRFWLSYRPYESKNVAREWFIGPVLTWMHSQDDRIAGISQSGSGGDLLLAGVTTYVGVRPGMHVWLGMDWDVAHSTGTRFMPIRRHISVGITQQFRIHL

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