NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207646_10087743

Scaffold Ga0207646_10087743


Overview

Basic Information
Taxon OID3300025922 Open in IMG/M
Scaffold IDGa0207646_10087743 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2783
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003667Metagenome / Metatranscriptome474Y
F039301Metagenome / Metatranscriptome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0207646_100877431F039301N/ADAEESVRSADKVAQIQGVQVNLQIHSWAEPNGYPGGGVLERGLRLKSRKAGDAHPFVDPATFTQWVKRAQENAAKAVQEEKQKAKK
Ga0207646_100877432F003667AGCAGGMSKLFAAGLVVVALAMTLLFAHSRAFGQAAKSADPIFGRWMMDQTKSVNNRGGDHATFPTQHVRILAPEGDGLRNTLANSPTSSPQYSYSAKFDGKDHPDPRTPGKDQTLAHWHLAPDLIVRQQKTDGKTSEWVIYTVSADGKVFTSISWTPSNPELQDVQVFTRAN
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