Scaffold Ga0207694

Basic Information
Taxon OID	3300025924 Open in IMG/M
Scaffold ID	Ga0207694_10000003 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025924 Open in IMG/M

Scaffold ID

Ga0207694_10000003 Open in IMG/M

Source Dataset Name

Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1165533
Total Scaffold Genes	1098 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	614 (55.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

1165533

Total Scaffold Genes

1098 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

614 (55.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Michigan, USA

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001605	Metagenome / Metatranscriptome	664	Y
F008640	Metagenome	330	Y
F010067	Metagenome	309	Y
F010196	Metagenome / Metatranscriptome	307	Y
F016574	Metagenome / Metatranscriptome	246	Y
F022212	Metagenome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207694_100000031053	F010196	N/A	MSGPRLIVGIIVMGIAVPATIFFLLGLHTPSQFFTVAATTFLAWGLADLLASILERPRLENRSPGMAIKEDLERRRDDLSS
Ga0207694_10000003115	F008640	AGGAGG	MTPPDPYDIRRIFFTPRPNLPLMTAAERLGMTLQELKRDIADGAIVAVSTRVGTRVTKEEMIATAMRLWDLSVIEEALGDDAPRLIPEAIRLVELRARVPRYQRDVLRELARRGGTSVDAVLTRELEDVACAHAEELSGVLPDLAAALAWPGVMA
Ga0207694_10000003290	F001605	N/A	MSVTQSEPQTLSEVPFKVLDETLRQLRSTRNDIIRYGVWNTRNLTDDEFNHADDRKLLGYFRQDLLETRFLSKGRKIDLIQLWHWFDDQMTGTEPMLINGEEHFVNVQDKDLEKVRKRISEIQSFLPTLRGDDLEAFKRVKYKLRRTVLRLTYDLHHLFKRLEKYRKNFGGPMAPRADRIPLEAAVDIPEPPPIDEHDHDAE
Ga0207694_10000003376	F016574	GAGG	MLEIDIVDRIRHIFLHPRPHVSISQATALLGWSRRRMSEAIEAGEVELWTTPVGKWFPRAEMMAKALEVWPLHVIEEALGADSAGVLPQAIRCAELRVRLPRHHIEMLEYRADQQETTVSGVLERELDGIASAHIEELSAALPGFAEAMAWPAG
Ga0207694_10000003696	F022212	GGAG	MRRFLVLLALAAVSCGGGSPDASDNSSEWLHVLRHKQAASAPNAPVHAKQAYADTLGAFVVKHPTHSRAREVYQHIQLDFAHELAVVGRHQDAIRIYRAILTHDPKNDAALKGLADSVDHLAVSHEKLLALEKGMSQRDVAHLLGKPIPGWQVTNDRPDSTIESWYYRRTGGGIAGVYFRDGVLFAAEENSQAKIAPLMRQ
Ga0207694_10000003850	F010067	N/A	MTEDDQRSDEARESFAYFSNEYAQALQAFKTIEGQSSTLLLMGVSDELRGFIDQFITMASGTKALAEERDETHFAEWFGELIRKAEVLRGEIVPQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207694_10000003

Overview

Ecosystem & Geography

Associated Families

Sequences