 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025925 Open in IMG/M |
| Scaffold ID | Ga0207650_10000374 Open in IMG/M |
| Source Dataset Name | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 42233 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan, Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002239 | Metagenome / Metatranscriptome | 579 | Y |
| F022439 | Metagenome | 214 | Y |
| F023898 | Metagenome | 208 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207650_1000037418 | F022439 | AGG | MRTLKIAVLVVLMSFVGHAQERSDADATYALKGPVHTFKVEVATFVSKDGSYVEGPRVAQMEATFNQDGNRTDLLMYDDRGAVVRRIVMKFDGLKMTEALNYDGLGKMWLRIVNVYDEQSRIKEELTYHGDGSLRTKKTFKRDELGHAIETNEYNTQGVLLDQFKNDFDGPLLLTTVRKVYRENGSLASTSFYEPEKRRTETTNYNPDGSVANKTVRTAQQLETYGPDGSLQKTGTISVQNRLVDAVVLNQDGSRTKESNAPDQLDAHGNWTKMTRWQTDSQGTRPLTVAYRTLTYY |
| Ga0207650_1000037419 | F023898 | AGGAG | MILSFKQIAAAVVLGICAVSTSGVMAQQTPVSAVRVIRYQGDFAMALANMSGTFGVTIGLELDTQRYRTVTVSLDDATVMDIVNAIVQSSKKYQWQQTGGFIDVWPIAGSNPLLETKINSFNVKDLSPSEAFDRLLNLPEVQQNMTALNLKRRAPDVAPEKLSSAKFSVNLEGVSLREALNKIAQESHIGIWIFRNYPNGFFSISSLER |
| Ga0207650_1000037431 | F002239 | N/A | MDFEARCEMLGGMWKYILASILLVIGILEIVLALNEGLRDALMQTSPVRFKHAESSAFLLAGISALVMGIGILFFGSFW |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |