Basic Information | |
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Taxon OID | 3300025925 Open in IMG/M |
Scaffold ID | Ga0207650_10078310 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2501 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan, Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013837 | Metagenome / Metatranscriptome | 268 | Y |
F040395 | Metagenome / Metatranscriptome | 162 | Y |
F043689 | Metagenome / Metatranscriptome | 156 | Y |
F050357 | Metagenome / Metatranscriptome | 145 | N |
Protein ID | Family | RBS | Sequence |
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Ga0207650_100783103 | F040395 | AGGGGG | MLGIIGAGAGIPPEMSNATSWTMAEGFVLLVGYVLAFVVAVWFVAWVDRKLSSRRLFREIYRELGIGRRPPR |
Ga0207650_100783104 | F050357 | AGGAG | VEGIRLWRASRQKLVGMVYLDKGVLDLDIQDDHERALVEDVLEQTGQVTWSFSRFDEGEWQENIAEPRTERWLWFVVANILYPMGYQADLGISEDG |
Ga0207650_100783105 | F043689 | AGGAGG | MTTLYDTVRIEAPKRSPVRPASPLDPSWNDGSEIPSSERSVQDRSRSTQWDRLAMGHGQSLWREAA |
Ga0207650_100783106 | F013837 | GGAGG | MTTLMDPVRIEAETRPPAGPGSPLDRSWDNDSETRSRERSFEVASRGGYARTVVGRLAYFDEEAQTYMVLTRSGALVRVPLRDITSSRGVPRTGPIVADALSRMSRLRSATTVSPT |
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