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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025926 Open in IMG/M |
| Scaffold ID | Ga0207659_10000002 Open in IMG/M |
| Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 619441 |
| Total Scaffold Genes | 572 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 371 (64.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan, Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001519 | Metagenome / Metatranscriptome | 679 | Y |
| F068102 | Metagenome | 125 | Y |
| F081525 | Metagenome | 114 | Y |
| F101835 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207659_10000002184 | F101835 | GGA | MKCAHEGNVLRAAAEDRWSEALRGHVGECADCAAAAAAAPWMSSFARMSDREHRLPDPSIVWLKAQLMQGVADVARISRPITIAQLMAYFAVAAGWAALLTWKWHAVQAWLHSFTPTGLVQNAARSESLSISFLTIVFVLASTTVMLALHTILAEE |
| Ga0207659_10000002254 | F081525 | GAGG | MSISRLTAVAVLLLGAQVASGAQCVNRFVATRQGVRHVVTLLTGKLTFQEAQQLAKAIQAKQSPPLEWVDDSGKSIAKQSGMLEVVRPMPVGCDGKTSGVVMIVNFATASAPAKKMNLKLNADTTVAFEEQGK |
| Ga0207659_1000000248 | F068102 | GGA | MRSRPSQLLFVLAALLFACGRPQPLTAEKAQAIINESSYKREPIYAEVPQKVWWSPRAPKDDYDEKALRTLRNLERAGLVTITATESPDSATYIAKVTKKGFPILGTAPSYRGPVYRAQIAEKHYDGIRNFVRHPTQPTVGHAELIWHYDNPTPYYTMFETKIDKPLQKPFASHVSFWYGKHEWRFEVNIKKTQPAA |
| Ga0207659_100000027 | F001519 | N/A | MTLVNSLCAEISVFQGVGETTGLVVERAAIRGKRGLCKSMRDLAIKSRVLGDGYYYIPIDLWPKGKEPVVVHKHDWTVISSIPRTSRATKKRAGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |