Scaffold Ga0207687

Basic Information
Taxon OID	3300025927 Open in IMG/M
Scaffold ID	Ga0207687_10000003 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025927 Open in IMG/M

Scaffold ID

Ga0207687_10000003 Open in IMG/M

Source Dataset Name

Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	875159
Total Scaffold Genes	777 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	445 (57.27%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

875159

Total Scaffold Genes

777 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

445 (57.27%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Michigan, USA

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002279	Metagenome	575	Y
F024882	Metagenome / Metatranscriptome	204	Y
F033211	Metagenome / Metatranscriptome	178	Y
F037774	Metagenome	167	Y
F066879	Metagenome	126	Y
F072395	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207687_10000003169	F002279	N/A	MSSAPSQTISPVRDWSRQVAESLKQHGAWHTYLKLIEARGAYPDDLSLRGYTEILRNTIVRDFLAHPKSMQAVPKLTADFLSNFDRFNLTAQEGYLMSLIDGRLDLQKLLILSPFDQFTTLFTLAKLQHERAITVPQ
Ga0207687_10000003195	F033211	GGA	MDSTTTTVVLRYRDGRTERAALIETDVDRQIVRVSRDDGANDDVPFSTLKAIFFPRSADQALEEPAGSTIAVEFADGEVIRGVAQYNPERNGFFLYPLDRSKNDRIFVVNSAIVSIEVEK
Ga0207687_10000003399	F037774	GGA	VRIAPPPRNEVNFATVDSPSLQFLPRQQEAQIWKLDEDPIVIPGDHLNTYLGPVEAPQFARYETLDLTIGKYSTPGSDGFATVEIFRFPDFVKAFGAYSKQKNGNLRFIDIPNESFAKAHSVHVWRGPFYVRITGAGQGDAVLKLATFVADKMPPAPSKPAVFAFLPDKQRVIGSERYSADSAFGQPFLANSFQATFNIDNDLIDGIVIPAANKQAAGNILDQYKGLYLHNGKLLDPIPNLGEDNFTAEDRYLGRVVAFRIDRFVIAFNGYHDRQHLLDLATAADQRILGTIRKQLVTADKEAENADNGNTSTVPAWMQHKR
Ga0207687_10000003697	F024882	N/A	VPCDHIGPAELIEMAEADLRERGVAAAEGMRFRWSENPVDGMWASIVTEIERRGDEWIVTRLDRNREPLPDGETGFRAL
Ga0207687_10000003731	F072395	GGAGG	MGVCNWCGSAFPLTRSTRKYCTPRCKTNACLGRKPSRIRAAEVEALHELLHAELASAELFRERLRAIIAPNLPPIAEPSVPRLD
Ga0207687_100000038	F066879	GGAGG	LRLGVITLGHVHAEELNALTPYLQHLEQLVLDVPFDDPLSKHRAELNRAVDAASDDWLLIVREREIVDDAIAREITDAMRAQTAWGFRIRSIPMYAGKPLRIGVNEGELRLFHRRHLLRRGELGVQGTVIRLNNVLRSMSFDTVVAHREYLEKTGVPHSLLRRLLLFAHHAVVTRARDANTLRYLWIEAGYDHGD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207687_10000003

Overview

Ecosystem & Geography

Associated Families

Sequences