Scaffold Ga0207687_10002207

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207687_10002207

Scaffold Ga0207687_10002207

Overview

Basic Information
Taxon OID	3300025927 Open in IMG/M
Scaffold ID	Ga0207687_10002207 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13271
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016698	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207687_100022079	F016698	AGAAG	MKRGLITWDKAELPPSVFDRRLAKVRDGLAKQDLPALLVYSDVWRSNEGRHLTNYMPYWNRSLIVLPREGAPVLLCGLSPRVYPWIKSMTIFEEIRPASKLVPTLLQLCSERGWTELGVLDLARLPHEIHAPLEASNVKASNVKLDLTDDAEIAMLRRAEQMAREILTAELPKGAGLTDYQFSGLLERAFRRAGAEDLVLLFRTGDAAPRTARGSMLGDKFSVAVALEYRGHWARVTQGLPL

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