NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207687_10004235

Scaffold Ga0207687_10004235


Overview

Basic Information
Taxon OID3300025927 Open in IMG/M
Scaffold IDGa0207687_10004235 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9592
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060227Metagenome / Metatranscriptome133N
F083316Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0207687_100042357F083316AGGMKYFASYLFITYCAVNLLAVDAWSTDLGTKARIQESVRGYLVDTVCVREEAAQLARLGSKHTRKCLEMPACRESGYALLLLPNKNDVLHFDKRGNELAFRLVSGHRAETGWLLQATGKRTGDQFAVATLDFVPKSPAKRLRNPKTE
Ga0207687_100042358F060227GGAMLVQQKFLRAIAISLGMIFLLSMVAVAVEPVPLPDIQLTAADGSTVKSSALPTTGNWLIIYIQPRNQFSDNLLRLLKKDQYPTLASHAVIIVGGSTDDLKTAQTRFPELAQATWYADTNKSAFTLMKLTGAPMILGIKQRTITWSLSGILSDVNVAKSILNTWVEG
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