NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207664_10225922

Scaffold Ga0207664_10225922


Overview

Basic Information
Taxon OID3300025929 Open in IMG/M
Scaffold IDGa0207664_10225922 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1626
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001643Metagenome / Metatranscriptome659Y
F052106Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0207664_102259222F001643GGAGMLGELINIPTDTLIDMLYMIVAGELSITASDAAEIEQIQRELQRRDGAQNWSFATIH
Ga0207664_102259223F052106N/AATVMLPSANGGLAPASKTHAVRKRAANDTVETETTTWLLDVNGKWQLSEIRQNTTRQEAKDRRIEERVFRSDAEGKLGEVSHVVSQDSESTSGEKRSVVETYSIDVPGNSQDGSLHLIERKTSTDSSSCTGERATELKVEQTNPGDRGGGLRVSVLVDGRMVPGPSGEQSTVTIRARDVNGSFAIVSVETTRSDKIPTIQVQQTPAEKP
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