NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207701_10003941

Scaffold Ga0207701_10003941


Overview

Basic Information
Taxon OID3300025930 Open in IMG/M
Scaffold IDGa0207701_10003941 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15162
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024167Metagenome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0207701_100039414F024167AGGAGMSLVTLAVMYGHLEGAGGNFARDPTGHLSIEAGIFEKHGLQVSWNHVQGTEERYRRLETGSAQISLVVGRASLQHFLAAKTTRILGVAMNRCPYYLIAPPAIGTLADLKRKVVACREGPSRNTPIAETFLERADLRIGADLFLQLPSGDQDAFDLLIEGQAHAALLPRPFGFIAEERGFKRIEEWPEIVDDPLPITIETTAKLWSEREKELRTFLNAHSEGIRYFKTHRADAVAVLTKRFGHSAALAEKTFDNYITCMDDTLQVDFRDFEKLLSQIAPETSERARQIAAEWIVPAAVKA
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