NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207701_10695534

Scaffold Ga0207701_10695534


Overview

Basic Information
Taxon OID3300025930 Open in IMG/M
Scaffold IDGa0207701_10695534 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)861
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016418Metagenome / Metatranscriptome247Y
F096853Metagenome104Y
F101050Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0207701_106955341F101050N/AAGRESAQQERPMSRGNREKKKPKADKNKAKPVAAVTPFGAASNAGKAPGKPK
Ga0207701_106955342F096853GAGMFSIGQVFEGVIGGTLRPAKVIAIVDGGRIGWLEFLDIKGPPFELTGANISAWKLVRHDR
Ga0207701_106955343F016418GGAGGMSYRGYDLEQKTLMVGWQITITRDGKFVRNGIVTKELSAAMDEAEKFVDRVLAESDSAAPGASS
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