NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207701_10876388

Scaffold Ga0207701_10876388


Overview

Basic Information
Taxon OID3300025930 Open in IMG/M
Scaffold IDGa0207701_10876388 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)753
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018245Metagenome236Y
F065877Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0207701_108763881F018245N/AMPDFLARLTKAVQSQLFEEMNYMNLEEIRGFCSERGIPYRIVIAYPDGKARATTDTDRKPIVLARVR
Ga0207701_108763882F065877AGAAGGMSDETTPPRRWSLRKWVDIGQSATIIALALSLFSFYRSYVYVNQKLDLTVTEVSYGTNTGELYITVAFSNGGNRDAAVLRLESALWARGSDGKTQWVPIMTPVAPDLPVVTPHVPLVVKSGGVEVIRLSTLLNAKEAEKRLVQFKDGA
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