NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207644_10651158

Scaffold Ga0207644_10651158


Overview

Basic Information
Taxon OID3300025931 Open in IMG/M
Scaffold IDGa0207644_10651158 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)877
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047739Metagenome149Y
F066047Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0207644_106511581F066047GGAGGMTGRGGRTSGFDEMEALIYRLFAEKQFALALLALVMVAQLLSAQFLLLRLRPPAQQSRGAPSASQRLDVKCDAGFARTLGGEAMSPQTARGKVVVMHLGMFEEACLAQVTSSGAAELVVG
Ga0207644_106511582F047739N/AVALFRYLKDRRERAGLPSDRLPEDPTSLLGNSSRATAEQIGTYLHRKLFANDGTCALSDTGALLALRRREGTLRWLAQRWPRLVFSGKTGSSPHDDSALAAVGICLDQRPVVLVAALRPLQGTLPDGLHGSLLLRGIDAYLRELTRLDRKPAAALLPAWAEADPQAPVEASP
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