NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207686_10278072

Scaffold Ga0207686_10278072


Overview

Basic Information
Taxon OID3300025934 Open in IMG/M
Scaffold IDGa0207686_10278072 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1234
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023285Metagenome210Y
F026234Metagenome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0207686_102780721F023285GGCGGVSEELSARLRRVEQQVRVFKQLHQSELQIILDELTDIVKQVEAERAAVTPPAHTSDADPDDPAAASPKRAKWLAEQANKAAPKSRRELLFGER
Ga0207686_102780722F026234N/AVCAYTKAELPTPWLAIFHRFERVMEKAGLRIRVRLFPLEELPEGFEILVVPAELQQAAEALQTGARIIVTSRAEAPAAADALLREIELGETLYAEKVRPGEPKIMTHRGGDIL
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Institute for Fundamental Biomedical Research
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