NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207704_11589382

Scaffold Ga0207704_11589382


Overview

Basic Information
Taxon OID3300025938 Open in IMG/M
Scaffold IDGa0207704_11589382 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)562
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003510Metagenome / Metatranscriptome482Y
F024161Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0207704_115893821F003510N/AGDGDAERRREITAQELGALLSGIDLSTAKRHKRYQRPRQ
Ga0207704_115893822F024161N/AVAIDPNSLPRDAETLRKIVVDLAEQLDRSLAEQNKFQTLLRELLEAQRNRKSEQSWKEQLALFEAAWQERNTEDESAAGEDDDDLDGDAGAGAAPKETPSQKRGGQPEVVPKSPSGAAVRYALNQ

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