NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207711_10003000

Scaffold Ga0207711_10003000


Overview

Basic Information
Taxon OID3300025941 Open in IMG/M
Scaffold IDGa0207711_10003000 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14752
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065185Metagenome128Y
F085609Metagenome111Y
F103138Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0207711_1000300010F103138AGTAGMKATILLNHSENTRRVEDEEKTRFLRNILELMGVPIQEFWPSDEPLSVEQRIKLRNILATYSVQVIDDLDGHMQVYVENEKVAEWFKCTYKLKRDLRELDPRKQLYLEMEVNCWSLFEEAEQETE
Ga0207711_1000300017F085609AGGMQDKVVAEAVRIEYEEKTGKLYIVFEVTDEKYKQDLKKNWTKDIEYRLIDKSLVEASK
Ga0207711_100030004F065185AGGAMKVEFEDKSYIECRRSDNPGKIIISISAKDYQNPLKRIINTVEITTEQFKQLMSEVL
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