NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207661_10000002

Scaffold Ga0207661_10000002


Overview

Basic Information
Taxon OID3300025944 Open in IMG/M
Scaffold IDGa0207661_10000002 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)816104
Total Scaffold Genes780 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)443 (56.79%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001519Metagenome / Metatranscriptome679Y
F002324Metagenome571Y
F002548Metagenome / Metatranscriptome549Y
F003710Metagenome / Metatranscriptome473Y
F006090Metagenome382Y
F008503Metagenome332Y
F009860Metagenome / Metatranscriptome312Y
F013826Metagenome / Metatranscriptome268Y
F014455Metagenome / Metatranscriptome263Y
F022212Metagenome215Y
F043999Metagenome / Metatranscriptome155Y
F081482Metagenome / Metatranscriptome114Y
F095945Metagenome105Y
F101403Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0207661_10000002175F043999N/AMEKPVRRILLPGVSDAGAPPPVVIDSRVVVARARRRAIVRDVIDLLLLVCVDGLFLRWPHAHVPLLDRYDSLLVLLGLNAMLVGYVWLARALPRWTARRVASTWCLAERTRFFRSTAR
Ga0207661_10000002309F006090N/AMSLLAQRKGPAAPLPRLEGKEVLVGPNPDAAKVKGVMFGGRKQFLNEVAGEEGFAAIVAKLSPRTASYTKTPLASSWCEFASLIELDRTTYETLKQKYPNVLALIGAASAELGIGRVYKSLDSTELVKFMESQALFHNQFQKFGNVRFDKTPNGGRMTCSDYPVYSPIYCASAVGFYLESILRHGGTDPSVVETKCQTLGDSHCSFEMTWR
Ga0207661_10000002365F081482AGGVVESQFGLLNAVQRPQVTMLGREAYSTFPDKVAAFLFALLINSPFKGGNRRVALASLFAFCELNNRTVDSRLLDEKAAENLFKRAAGHRELGIPPENVFREIRETMTRAIMPLS
Ga0207661_10000002367F003710N/AMLIKGMTEQEIRVLQEFRRLAVESLGIAAIKGIKHPAGGGEGPAFSLVDKGMLTTDAARENFSLTEKAKEFLSYDPKPEFEEAGSAVEEPVVVE
Ga0207661_10000002414F001519GGAGMTLVNSLCAEISIYQGVGEQTGVMVERSAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPNELWPKTDEPVVVHKHDWTVIGSIPRTSRATKKRPKRAHAEQL
Ga0207661_1000000246F013826AGGAGGMAVCWRCPSCSEISCEDDVHVTGNPVACDHCERPFPQQETLCTVCDAPNPWIRRDTLHFLCRECGTAQTYFSHLPMAG
Ga0207661_100000025F008503N/AMKKTLIVVALIALVVWVISWFRVPEAVKTSAAKPWPGGGSLDSVDNRFPQSQANAASAKLMALANALPKNDAIGAFVSRETARGELTVGGSPSLPDVTAVRELLLREPVVWQRREGIGGGNDLNAERAAQMSMARALVASALVKARANDPAAWDDLHAAWNLARSLDGHPQMMVRTAAMTIARMINAAAWKMPLPAPAWFGELQQRDAVPQLLESYQFQTASYAKDGLRLFPTKMLADSVDRDRGIAEELAKETRCDVKPRANELGVDLTSVWRRAFRFRAEREATANALRAREGHPIERASRCSDGQWTFDATTVRFTHDIAPVAPDRGMPLALRVTP
Ga0207661_10000002586F095945GGAMIAVLAFFFATAFPSTSKTSWMRPESFHLTIGMNRAEAVKALESNGWKTKKGDSAGQILVDYADDKSLTLQFAGERLTSIRFELFTILQEAPKAFEEERVFLRESLGKPRKATKKVVIYDHKLPNVMAVLSADPKSEQAQKGVGMLVVRYYDPVK
Ga0207661_10000002625F002324GGAGGMGEIKLFQVCYEGELTLAVSEAMRRLGAEPNFDQSWNVWLPEGGHAELLVRYLRIEVGDEARVLIGCSQFTSTRDFLLIRHSLTPGADYSELHDAIGRLGVVVDLPFESTFVVQSDDRTDVNTLGMALGELCPDDALFVTGISHDWAYCDGTTSRMYVAEQEPKSIQFRTF
Ga0207661_10000002649F014455AGGAGGMLHFLKKLLMFRVGQKTTRGVARSIGLGKIATVVGLIGGYKHMRKHA
Ga0207661_10000002684F101403AGGVSWLASLPHQIPFRAASAATRIDDKTIEGLYVCTADDRMPPSVMAVEAMAQLGGGLAFTSQGFLTGIDRCEVDRAIEAGDVIRFVVTLDANFGGTFRFTGSGAIDGVEVIRGRFYLASPP
Ga0207661_1000000269F002548GAGMSKYAMDSTMEVRSPIFERRRLRRIRMIVELTLNLVGSDMTVSHREARCLVRCARKAILELHPGFEQRYERIVRPYFERVLASRWPHEQALDDDCCDVVN
Ga0207661_1000000272F022212N/AMRRVLILVALAAVSCGGGSSDATDNSSEWLHVLRHKQAASAPNAPVHAKQAYADTLGAFVAKHPTHSRAREVYEHIQLDFAHELGVVGRHQDAIRIYRAVLTHDPRNEAALKGLADSVDHLAVSHEKLASLEKGMSQRDVAHLLGKPIPGWTITNDRPDSTIESWYYRRTGGGIAGVYFRDGVLFAAEENSQAKIAPLMKQ
Ga0207661_10000002746F009860N/AMPTSIRQIEFLARSIVNRLEDRGLVEFGDAEIGIDVVTKTLEDNFAAYDAIEAEARIRLTKSIGSREPSDIEVTEAMKRVAAERNVTL
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