NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207679_10119681

Scaffold Ga0207679_10119681


Overview

Basic Information
Taxon OID3300025945 Open in IMG/M
Scaffold IDGa0207679_10119681 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2094
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000283Metagenome / Metatranscriptome1379Y
F000336Metagenome / Metatranscriptome1274Y

Sequences

Protein IDFamilyRBSSequence
Ga0207679_101196812F000336N/AMPSGGKKKRKKPSRKKSDIDSALDQIGDESVAAATAEFQDLVSEAKGDTTELIRQNAEEIERRLDLLKKREIDKEDFDHFLENQKRDLRVFIDAQPAQAQERAEKLTLHILETAAKVAIALI
Ga0207679_101196813F000283AGGAMNSTLVSRNVFLCAAAIFIASCGTATFTKSGSDATIESLRSFHLAFIDEFAVPGKKFNVTAFNAKVNEGNAKFQEAIANDKFTARRPVFVDLKAQFDADAAHIKSKASRGKVTPALASEMKKDVNKTYDHALGR
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