Scaffold Ga0207651_10662999

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207651_10662999

Scaffold Ga0207651_10662999

Overview

Basic Information
Taxon OID	3300025960 Open in IMG/M
Scaffold ID	Ga0207651_10662999 Open in IMG/M
Source Dataset Name	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	916
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052428	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207651_106629991	F052428	N/A	PALAEVSSGAMTSLRTFAIVAAPLLASAFLIGCTSARMAPPADVADASEVLAVSDRTAWSGQFVNEGFKLGNYDVVDVDRKWSSSSGSGIGPWSKETKTTGFSYALAAGGKKLPGKCSSVSSSNAVGGFSWGHMKIACACDGEDGKAELVMTDKGRTLKVRDSEYRLEPIHALVGGGTMANPTGFRADGDQPLGAVDVMHPGQVWLKKGLDDATRATTTCIFVGLMLYKPPGAGTP

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