NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207712_10635024

Scaffold Ga0207712_10635024


Overview

Basic Information
Taxon OID3300025961 Open in IMG/M
Scaffold IDGa0207712_10635024 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)927
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081522Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0207712_106350241F081522N/ALVDAALTVSASAFAPSSLTLASTAGDVNLDGSETRGTVPAGNLPLPAGSPTSITVTFNDVSPEQVVASDRYLGVGLTIETSLDDVVEGSLNAVPCDGTRSIKTASFTGPFLLRFPHGVTSVSLDAGDIGSSDSDVIMVKAYSDDALQTLIATDIGSLAQGAPTGCVRLSVQAPEPEVAVIKAVEITADGVYVFSSNSPSGVASYPNSNP
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