NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210103_1008906

Scaffold Ga0210103_1008906


Overview

Basic Information
Taxon OID3300025968 Open in IMG/M
Scaffold IDGa0210103_1008906 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1795
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.224518Long. (o)-122.019257Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026912Metagenome196Y
F037274Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0210103_10089061F026912AGGGGGMDRKEHKPHFSIIDSMIDDSEPLRAEYLRGFHRGIEVQVFGVSDEWIEEHRMLIGYSIGDSGDSYIDSYSRGYRHGFKGKTPESPPLYSESSESLN
Ga0210103_10089063F037274GGAMKIYAVYRLGYWNNKLELLGKVVERRKEERKNNAADMLRWAQKIYAASSIDSSIFIVKEGSSEGAIFGGA

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